81. SBG | Structural Bioinformatics Group Structural bioinformatics Group at Quilmes National University in Argentina. http://ufq.unq.edu.ar/sbg/

Welcome to the Structural Bioinformatics Group Our group is focused in the use and development of molecular evolutionary models to understand structure-function-dynamics of proteins. We are also very interested in using this information to develop bioinformatics tools. Our main interests are: Development of tools for structural model quality assessment. Study of the role of conformational diversity in protein evolution. Use of structurally constrained models of evolution to improve protein-protein docking tools. Study of the sequence-structure relationships in allergenic proteins. External Links Universidad Nacional de Quilmes NCBI RCSB HyPhy

82. Institute Of Bioinformatics, Zhejiang University Home page of the bioinformatics research group at Zhejiang University, China. http://ibi.zju.edu.cn/

83. SeWeR: Sequence Analysis Using Web Resources An integrated portal for common web-based bioinformatics services. Built in Javascript as a standalone browser application. http://bioinformatics.org/sewer/

84. UGENE - Integrated Bioinformatics Tools Free cross-platform bioinformatics software package for DNA and protein sequence analysis. http://ugene.unipro.ru

home documentation podcast forum ... October 21, 2010 UGENE is released August 20, 2010 UGENE 1.7.2 is released July 9, 2010 UGENE 1.7.1 is released June 2, 2010 What's new in UGENE 1.7.0 podcast May 19, 2010 UGENE 1.7.0 is released April 2, 2010 What's new in UGENE 1.6.2 podcast April 2, 2010 UGENE on Twitter March 29, 2010 UGENE 1.6.2 is released February 25, 2010 UGENE video tutorials series have been started February 16, 2010 UGENE 1.6.1 is released December 22, 2009 UGENE 1.6.0 is released October 06, 2009 Russian website introduced July 22, 2009 Released package for PPC-based Macs July 10, 2009 UGENE 1.5 is released May 13, 2009 UGENE at Biotech World' 2009 Unipro UGENE: Integrated Bioinformatics Tools UGENE is a free cross-platform genome analysis suite. It works perfectly on Windows, Mac OS or Linux and requires only a few clicks to install. Features: Screenshots Swine flu in UGENE Workflow Designer Multiple alignment Main features: Multiple sequence alignment using MUSCLE 3,4 and KAlign; HMM profiles build and search, based on the source of HMMER 2 and HMMER 3; PCR Primers design using Primer 3;

85. BioAfrica - HIV Bioinformatics Software And Tools bioinformatics software applications and tools developed by researchers. All the tools are open-source and freely available online. http://www.bioafrica.net/bioinformaticstools.html

Bioinformatics Software and Tools These are some of the bioinformatics software applications and tools developed in our research group. All of the tools are open-source and freely available on this website. Bioinformatics Tools Description Blast Servers for HIV, HCV and HBV numbering positioning, fast subtyping, alignment, search private and public databases. BlastAlign is a program that uses blast to align nucleotide sequences that have large indels (INsertions/DELetions) or are otherwise difficult to align. CPR - Calibrated Population Resistance Tool HIV-1 drug resistance tool developed by Dr. Robert Gifford and colleagues in the Stanford HIV Drug Resistance Database to calculate the prevalence of HIV drug resistance in population sequences. GDE Linux - Genetic Data Environment for Linux and Mac OS X. HIV Epitope Analysis Tool This tool is designed to determine the similarities and mutations on epitope sequences. The sequence will be searched against the HIV-1 subtypes A, B and C consensus and ancestral sequences. HIV Quality Analysis Tool is designed to determine the quality of a specific HIV sequence. Sequence translational problems are identified using complete genome and the proteome of the HIV-1 reference sequence HXB2.

86. Bioinformatics Institute Singapore bioinformatics conducting informatics research, development, and training, to generate knowledge from large volumes of Biology and Chemistry data http://www.bii.a-star.edu.sg/

AC_FL_RunContent( 'codebase','http://download.macromedia.com/pub/shockwave/cabs/flash/swflash.cab#version=9,0,28,0','width','779','height',"234",'src','/common/flash/s_banner_home','quality','high','pluginspage','http://www.adobe.com/shockwave/download/download.cgi?P1_Prod_Version=ShockwaveFlash','wmode','transparent','movie','/common/flash/s_banner_home' ); //end AC code AC_FL_RunContent( 'codebase','http://download.macromedia.com/pub/shockwave/cabs/flash/swflash.cab#version=9,0,28,0','width','779','height','234','src','/common/flash/s_banner_home.swf','quality','high','pluginspage','http://www.adobe.com/shockwave/download/download.cgi?P1_Prod_Version=ShockwaveFlash','wmode','transparent','movie','/common/flash/s_banner_home.swf' ); //end AC code TTS mapping USAGP Database Defensins Knowledgebase Events Fri, 22 Oct 2010 BriX: a database of protein building blocks for structural a... more Mon, 18 Oct 2010 A geometric view of protein function and dynamics... more News 16 September 2010 H1N1 Virus exhibits drug resistance within... more 25 November 2009 Singapore Celebrates 30th Anniversary of p...

87. Bioinformatics Information Maintained by Dr. Seyeon Weon, Korea providing information on courses, a database archive, software archive and online resources. http://www.bioinformatics.pe.kr/

Bioinformatics Information

88. MBB 452a (752a12) Syllabus bioinformatics course at Yale University. All course slides are available online. http://bioinfo.mbb.yale.edu/mbb452a/2003/

bioinfo.mbb.yale.edu/mbb452a Previous Year's Course Pages (all links still work) Fall 2002 Fall 2001 Fall 2000 Fall 1999 ... Spring 1998 Timing and Location Meeting from 1:00-2:15 PM on Mondays and Wednesday, in Bass 305. Discussion Section Times: 6:30PM-7:30PM Mondays @ BASS405 The papers for the discussion are only available from a Yale University Domain Instructors Genomics Section Bass 238, Phone 203 432-6200, e-mail dieter.soll@yale.edu ava.artaiz@yale.edu Michael Snyder KBT 926, Phone 203 432-6139, e-mail michael.snyder@yale.edu Bioinformatics Section Mark Gerstein Bass 432A, Phone 203 432-6105, e-mail Mark.Gerstein@yale.edu joann.delvecchio@yale.edu Teaching Fellows John Rinn, KBT944, 203 432-5730 e-mail john.rinn@yale.edu Michael Seringhaus, Bass 437, 203 432-5405 e-mail michael.seringhaus@yale.edu Brief Description Genomics describes the determination of the nucleotide sequence as well as many further analyses used to discover functional and structural gene information on all the genes of an organism. Topics include the methods and results of analysis on a genome-wide scale as well as a discussion of the implications of this research. Bioinformatics describes the computational analysis of gene sequences and protein structures on a large scale. Topics include sequence alignment, biological database design, geometric analysis of protein structure, and macromolecular simulation. [ Blue Book Entry Rough Outline of Topics Genomics Section

89. Bioinformatics » Boston University Interdisciplinary PhD and Masters Programs that include an internship in the local industry companies. In conjunction with the NE masters program. http://www.bu.edu/bioinformatics/

90. OpenHelix: Tutorials And Resources Provides onsite training on specific bioinformatics databases and tools. Also offers bioinformatic software testing and research consulting services. http://www.openhelix.com

91. MBI - Master's Degree Programme In Bioinformatics | Department Of Computer Scien A two year Masters Degree Programme in bioinformatics (MBI) offered by the University of Helsinki and Helsinki University of Technology, Finland. http://www.cs.helsinki.fi/bioinformatiikka/mbi/programme.html

Department of Computer Science University of Helsinki Faculty of Science Search this site: Suomi English Home Research ... Contact MBI - Master's Degree Programme in Bioinformatics MBI Programme Admission Contact Content of the studies People ... What can MBI offer me? Degree Requirements Current Old Registering the study modules Teaching Programme Autumn 2010 Spring 2011 Internship Teaching and event calendar ... General Planning your studies Orientation for new students Personal study plan Master's Degree Programme in Bioinformatics Master's Degree Programme in Bioinformatics MBI is a two-year MSc programme offered jointly by the University of Helsinki and Aalto University School of Science and Technology. MBI programme offers a unique combination of bioinformatics, computer science, statistics, mathematics and biosciences. MBI graduates find opportunities in research, education and consultancy, in the industry, universities and research institutes. The teaching language of the programme is English. During your studies you will get to know students from all around the world.

92. Bioinformatics Institute Of India Blog focusing on bioinformatics, biotechnology, pharma regulatory affairs, IPR and clinical trials. http://www.biinoida.blogspot.com

skip to main skip to sidebar Bioinformatics Institute of India Blog of BII an Institute having thousands of program participants from more than 40 countries. BII is the training leader in emerging life science and pharma domains.The Blog Members are encouraged to share news, views, jobs, comments, with others. All the members (students, alumni, non students) are encouraged to Post and comment to the Blog. Blog focus is on Bioinformatics, Biotechnology, Pharma Regulatory Affairs, Clinical Trials, Drug Design and Discovery, IPR, GMP Friday, July 30, 2010 Admissions Open P.T.U Courses: For Further Details Please Contact: Mob: 09810535368, 09818473366 E-mail: info@bii.in, Visit us: www.bii.in Posted by BII Admin at Friday, July 30, 2010 2 comments Links to this post Reactions: Saturday, July 10, 2010 Collagen manufactured from transgenic tobacco plants has great commercial promise for Hebrew University Posted by sita at Saturday, July 10, 2010 0 comments Links to this post Labels: Press Release Reactions: Friday, July 2, 2010 Genes? It's complicated

93. Master's Degree Programme In Bioinformatics An international, two-year Master s programme jointly managed by the University of Tampere and the University of Turku, Finland. http://bioinformatics.fi

Master's Degree Programme in Bioinformatics University of Tampere and University of Turku Home page Information for applicants About bioinformatics Overview Curriculum Participating institutes ... Contact information About the programme Eligibility Studying in Finland About Finland For present students Courses Exams Teachers Course materials [INTRANET] Documents Eligibility Succesful applicants need to have a background either in biological sciences (especially biochemistry or molecular biology) or method sciences (computer science, mathematics, statistics). Read more Bioinformatics? Read more Programme description Our goal is interdisciplinary knowledge of bioinformatics, so the students will be "bilingual" in terms of combined expertise on information technology and biosciences. This is a two-year full-time study programme, and starts every year in August-September. All teaching is in English, and takes advantage of modern educational technology, such as web courses and video lectures, in addition to traditional face-to-face teaching. Read more Participating institutes

94. International Bologna Master In Bioinformatics A two year, international master s programme in bioinformatics at the Universita di Bologna, Italy. http://www.biocomp.unibo.it/lsbioinfo/

95. WELCOME TO BII Offers regular, distance learning and online programs in bioinformatics. http://www.bii.in/page/index.asp

96. Graduate School: Genomics & Bioinformatics Graduate program and application information. http://www.ndsu.edu/gradschool/graduate_programs/genomics_bioinformatics/

Skip to content NDSU Graduate School North Dakota State University, Fargo, N.D. 46 Doctoral Programs 66 Master's Programs Educational Specialist Degree 9 Certificate Programs Text Size Zoom small Zoom medium Zoom large Search About Us Prospective Students Current Students Faculty and Staff ... News and Events Location: NDSU Graduate School About Us Graduate Programs ... Need more information? Request it here. Program and Application Information Program Director: Dr. Phillip McClean Program Location: Department of Plant Sciences, Loftsgard Hall Email: Phillip.McClean@ndsu.edu Telephone Number: (701) 231-8443 Degree(s) Offered: Ph.D. M.S. Application Deadline: Links Bulletin Page How to Apply Online Application English Proficiency Requirements TOEFL ibT 71 IELTS 6 NDSU Phonebook Campus Map Search ... css aaa Last updated: Wednesday, October 13, 2010 7:46:41AM NDSU Graduate School NDSU Dept. 2820

97. Bioinformatics And Drug Research StartPage (US Version) Website presents a series of lectures on bioinformatics and modern drug research at the University of Konstanz. http://www.uni-konstanz.de/FuF/Bio/Bioinformatik/bivstartus.htm

Klaus P. Schaefer'); //> NATURE Genome Gateway Bioinformatics Lectures SCIENCE Functional Genomics Post-graduate Research Program Biomedical Drug Research German Version of WebSite BioLAGO Regional Biotechnology Network For the impatient: here is my Bookmark List with many sites related to bioinformatics but many others as well ... Here you will find a selection of special links covering all kinds of sequence or structure-related DataBanks Online Journals in the Library of the University of Konstanz useful for further reading and obtaining background information related to the lectures. The Lecture Files can be found here. QuickLinks Move mouse over icons for Info Lectures PDF files What's up? On these WebPages I will present the content of a basic introductory lecture in Bioinformatics and Drug Research . The course is given at the University of Konstanz (Germany). Target audiences are students of the life sciences and biology, but chemists and information scientists should profit too. Bioinformatics has become a firm part of the daily professional environment of many biologists, microbiologists, medical doctors or chemists. It is a field still witnessing an explosive growth in terms of data produced in many labs around the world as well as of the data published in the literature. Its impact is felt in academic institutions as well as in the industry.

98. Flags And Lollipops - Bioinformatics Blog A weblog of interesting bioinformatics papers, stories and links maintained by a bioinformatics researcher in the UK. http://www.ghastlyfop.com/blog/index.html

Saturday, June 13, 2009 Aggregating activity from Twitter Update: you can't follow a specific set of users using GNIP any more - their feed is equivalent to the 'spritzer' method in the official Twitter API. Interested in building a real time aggregator for Twitter? Who isn't? You have lots of options: Just the vanilla API Simply call for each user that you are interested in every x minutes. The standard rate limit on the Twitter API is 100 requests per hour e.g. checking 25 users every 15 minutes is pretty much the best you'll be able to do. If you're a lazy chancer you can try and get your application whitelisted which removes rate limits. Good: Very simple Not so good: Too simple - won't scale. Slow update time (while the number of calls you can make per hour is limited) Seeing so much redundant data returned for each call makes the internet cry. Vanilla API + robot Create a new Twitter account, log in and follow the people you're interested in aggregating tweets from. You don't have to follow people manually - you could do it programmatically using the friendships/create API call.

99. Bioinformatics Made Easy Blog with lessons, tutorials, information and resources. http://bioinformatics-made-easy.blogspot.com

100. BioSoftwares Provides information on bioinformatic algorithms, tools and services. http://www.biosoftwares.com

Content feed Comments Feed BioSoftwares Home ... Featured Avogadro is a new, open source molecular editor designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas. It offers flexible rendering and a powerful plugin architecture. While still in beta, the recent 0.9.7 release brings ... Read more BioClipse Bioclipse is a free, open source, workbench for chemo- and bioinformatics with powerful editing and visualization capabilities for molecules, sequences, proteins, spectra etc. The Bioclipse project is aimed at creating a Java-based, open source, visual platform for chemo- and bioinformatics based ... Read more BioConductor Bioconductor is an open source and open development software project to provide tools for the analysis and comprehension of genomic data. Bioconductor is based primarily on the R programming language, but does contain contributions in other programming languages. It has ... Read more A-MADMAN: Annotation-based MicroArray DataMeta ANalysis tool Posted by primoto On October - 3 - 2010 A-MADMAN is an open source web application and gene chip analysis automation framework for annotation-based  meta-analysis of data from public repositories (NCBI GEO). A-MADMAN allows retrieval, annotation, organization and analysis of gene expression data from public repository. It automates several analysis steps to be accomplished to setup a working environment for conducting meta-analyses, without giving up power and flexibility. A-MADMAN supports a collaborative working style for local or geographically dispersed teams through LAN or Internet deployment options, but can be...

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